Diffuser et promouvoir la culture en mathématiques et en informatique déployée dans les sciences agronomiques à INRAE et rassembler la communauté des maths-info INRAE.
Formation : Reads alignment and small size variants calling with Galaxy
This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina technologies. You will discover the new sequence formats, the new assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection (with the GATK pipeline), polymorphisms annotation and alignment visualization software.
This training focuses on practice. It consists of four modules with a large variety of exercise.
Registration/Information : http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-variants-calling-with-galaxy/