Diffuser et promouvoir la culture en mathématiques et en informatique déployée dans les sciences agronomiques à INRAE et rassembler la communauté des maths-info INRAE.

Publications

Reengineering of aerodynamic flow-field module

Publications

Chakkour, T.

Engineering Mathematics Letters, 2018, 2018 (Article ID 4) : http://scik.org/index.php/eml/article/view/3353.

Models for cell-free synthetic biology: Make prototyping easier, better, and faster

Publications

Koch, M. ; Faulon, J.-L. ; Borkowski, O.

Frontiers in Bioengineering and Biotechnology, 2018, 6 : 1-6.

Recognizing patterns: spatial analysis of observed microbial colonization on root surfaces

Publications

Schmidt, H. ; Nunan, N. ; Hoeck, A. ; Eickhorst, T. ; Kaiser, C. ; Woebken, D. ; Raynaud, X.

Frontiers in Environmental Science, 2018, 6

Macroecological and macroevolutionary patterns emerge in the universe of GNU/Linux operating systems

Publications

Keil, P. ; MacDonald, A. A. M. ; Ramirez, K. S. ; Bennett, J. M. ; Garcia-Pena, G. E. ; Yguel, B. ; Bourgeois, B. ; Meyer, C.

Ecography, 2018, 41 (11) : 1788-1800.

Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra

Publications

Rogier, O. ; Chateigner, A. ; Amanzougarene, S. ; Lesage Descauses, M.-C. ; Balzergue, S. ; Brunaud, V. ; Caius, J. ; Soubigou-Taconnat, L. ; Jorge, V. ; Segura, V.

BMC Genomics, 2018, 19

Toward a Computer Vision Perspective on the Visual Impact of Vegetation in Symmetries of Urban Environments

Publications

SAMIEI, S. ; Rasti, P. ; DANIEL, H. ; Belin, E. ; Richard, P. ; ROUSSEAU, D.

Symmetry (Basel), 2018, 10 (12) : 18 p.

Contribution of modeling to the decision support for agriculture reuse of treated wastewater

Publications

Kalboussi, N. ; Roux, S. ; Cheviron, B. ; Harmand, J. ; Rapaport, A. ; Sinfort, C.

Journal International Sciences et Technique de l'Eau et de l'Environnement , 2018, 3 (1) : 102-107 .

Small RNA-Omics for Plant Virus Identification, Virome Reconstruction, and Antiviral Defense Characterization

Publications

Pooggin, M.

Frontiers in Microbiology, 2018, 9

Some reasons why the latent period should not always be considered constant over the course of a plant disease epidemic

Publications

Suffert, F. ; Thompson, R. N.

Plant Pathology, 2018, 67 (9) : 1831 - 1840.

An untargeted metabolomics approach to investigate the metabolic modulations of HepG2 cells exposed to low doses of bisphenol A and 17 beta-estradiol

Publications

Cabaton, N. ; Poupin, N. ; Canlet, C. ; Tremblay-Franco, M. ; Audebert, M. ; Cravedi, J.-P. ; Riul , A. ; Jourdan, F. ; Zalko, D.

Frontiers in Endocrinology, 2018, 9

Steady state analysis of a syntrophic model: The effect of a new input substrate concentration

Publications

Daoud, Y. ; Abdellatif, N. ; Sari, T. ; Harmand, J.

Mathematical Modelling of Natural Phenomena, 2018, 13 (3) : 21.

Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future

Publications

Huws, S. A. ; Creevey ; Oyama ; Mizrahi, I. ; Denman, S. E. ; Popova, M. ; Munoz Tamayo, R. ; Forano, E. ; Waters, S. M. ; Hess, M. ; Tapio, I. ; Smidt, H. ; Krizsan, S. J. ; Yáñez-Ruiz, D. R. ; Belanche ; Guan, L. ; Gruninger, R. J. ; McAllister ; Newbold, C. J. ; Roehe ; Dewhurst ; Snelling, T. J. ; Watson, M. ; Suen, G. ; Hart, E. H. ; Kingston-Smith ; Scollan ; do Prado, R. M. ; Pilau ; Mantovani, H. C. ; Attwood, G. T. ; Edwards, J. E. ; McEwan, N. R. ; Morrisson, S. ; Mayorga, O. L. ; Elliott ; Morgavi, D.

Frontiers in Microbiology, 2018, 9

Assessing the aerial interconnectivity of distant reservoirs of Sclerotinia sclerotiorum

Publications

Leyronas, C. ; Morris, C. E. ; Choufany, M. ; Soubeyrand, S.

Frontiers in Microbiology, 2018, 9 : 2257

Ridge regression for the functional concurrent model

Publications

Manrique Chuquillanqui, T. ; Crambes, C. ; Hilgert, N.

Electronic Journal of Statistics, 2018, 12 (1) : 985-1018.

Advances in computational modeling approaches in pituitary gonadotropin signaling

Publications

Yvinec, R. ; Crépieux, P. ; Reiter, E. ; Poupon, A. ; Clément, F.

Expert Opinion on Drug Discovery, 2018, 13 (9) : 1-15.

A new proof of the competitive exclusion principle in the chemostat

Publications

Rapaport, A. ; Veruete, M.

Discrete and Continuous Dynamical Systems. Series B, 2018, In press

Modeling and analysis of random and stochastic input flows in the chemostat model

Publications

Caraballo, T. ; Garrido-Atienza, M.-J. ; López-De-La-Cruz, J. ; Rapaport, A.

Discrete and Continuous Dynamical Systems. Series B, 2018 : 1-24.

Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations

Publications

Fievet, J. ; Nidelet, T. ; Dillmann, C. ; de Vienne, D.

Frontiers in Genetics, 2018, 9 : 26 p.

Optimal strategies to refill hydric reservoirs with reused water – application to the Jaunay Lake case study

Publications

Crespo Moya, M. ; Orsoni, J. ; Bortoli, J. ; Rapaport, A. ; Rousseau, A. ; Jauzein, V.

Revue des Sciences de l'Eau, 2018, 31 (4) : 377–385.

Progress and prospects in gender visibility at SMBE annual meetings

Publications

Käfer, J. ; Betancourt, A. ; Villain, A. S. ; Fernandez, M. ; Vignal, C. ; Marais, G. A. B. ; Tenaillon, M. I.

Genome Biology and Evolution, 2018, 10 (3) : 901-908.

Effect of control parameters on biogas production during the anaerobic digestion of protein-rich substrates

Publications

Khedim, Z. ; Benyahia, B. ; Cherki, B. ; Sari, T. ; Harmand, J.

Applied Mathematical Modelling, 2018

Modelling an artificial microalgae-cyanobacteria ecosystem

Publications

CAIA, M. ; Bernard, O. ; Steyer, J.-P.

IFAC-PapersOnLine, 2018, 51 (2) : 655-660.

A “Fork-to-Farm” multi-scale approach to promote sustainable food systems for nutrition and health: A perspective for the mediterranean region

Publications

Verger, E. O. ; Perignon, M. ; El Ati, J. ; Darmon, N. ; Dop, M.-C. ; Drogue, S. ; Dury, S. ; Gaillard, C. ; Sinfort, C. ; Amiot, M. J. ; Medina Study Group

Frontiers in Nutrition, 2018, 5 : 1-8.

Adaptive estimation of high-dimensional signal-to-noise ratios

Publications

Verzelen, N. ; Gassiat, E.

Bernoulli, 2018, 24 (4B) : 3683-3710.

Detecting Markov random fields hidden in white noise

Publications

Arias-Castro, E. ; Bubeck, S. ; Lugosi, G. ; Verzelen, N.

Bernoulli, 2018, 24 (4B) : 3628-3656.

Relations between socio-economic factors and nutritional diet in Vietnam from 2004 to 2014: new insights using compositional data analysis

Publications

Trinh, H. T. ; Morais, J. ; Simioni, M. ; Thomas-Agnan, C.

Statistical Methods in Medical Research, 2018 : online first.

Properties of the chemostat model with aggregated biomass

Publications

Rapaport, A.

European Journal of Applied Mathematics, 2018, 29 (6) : 972-990.

Major changes in the composition of a Southern Ocean bacterial community in response to diatom-derived dissolved organic matter

Publications

Landa, M. ; Blain, S. ; Harmand, J. ; Monchy, S. ; Rapaport, A. ; Obernosterer, I.

FEMS Microbiology Ecology, 2018, 94 (4) : 1-46.

On the derivation of a simple dynamic model of anaerobic digestion including the evolution of hydrogen

Publications

Giovannini, G. ; Sbarciog, M. ; Steyer, J.-P. ; Chamy, R. ; Wouwer, A. V.

Water Research, 2018, 134 : 209-225.

Incentives under Upstream-Downstream Moral Hazard Contract

Publications

Loisel, P. ; Elyakime, B.

Annals of Economics and Statistics, 2018, à paraître : 1-20.

How to manage a small-scale multi-use forest ?

Publications

Loisel, P. ; Elyakime, B.

Journal of Forest Economics, 2018, 32 : 13-17.

A unique TGFB1-driven genomic program links Astrocytosis, low-grade inflammation and partial demyelination in spinal cord periplaques from progressive multiple sclerosis patients

Publications

Nataf, S. ; Barritault, M. ; Pays, L.

International Journal of Molecular Sciences, 2017, 18 (10) : 2097.

A framework for modeling adaptive forest management and decision making under climate change

Publications

Yousefpour, R. ; Temperli, C. ; Jacobsen, J. B. ; Thorsen, B. J. ; Meilby ; Lexer, M. J. ; Lindner, M. ; Bugmann ; Borges, J. G. ; Palma ; Ray, D. ; Zimmermann ; Delzon, S. ; Kremer, A. ; Kramer, K. ; Reyer, C. P. O. ; Lasch-Born ; Garcia-Gonzalo, J. ; Hanewinkel

Ecology and Society, 2017, 22 (4) : 1-25.

Mapping local and global variability in plant trait distributions

Publications

A bioenergetics model of the entire life cycle of the three-spined stickleback, gasterosteus aculeatus

Publications

Leloutre, C. ; Pery, A. R. ; Porcher, J.-M. ; Beaudouin, R.

Ecology of Freshwater Fish, 2018, 27 (1) : 116-127.

Estimating virus effective population size and selection without neutral markers

Publications

Rousseau, E. ; Moury, B. ; Mailleret ; Senoussi, R. ; Palloix, A. ; Simon, V. ; Valiere, S. ; Grognard ; Fabre, F.

Plos Pathogens, 2017, 13 (11) : e1006702.

Assessment of evaporative cooling efficiency in greenhouses equiped with wetted porous plates

Publications

Alves-Damasceno, F. ; Barreto Mendes, L. ; Yanagi Junior, T. ; Luiz de Oliveira, J. ; Osorio-Saraz, J. A.

DYNA , 2017, 84 (203) : 118-125.

High biomass density promotes density-dependent microbial growth rate

Publications

Krichen, E. ; Harmand, J. ; Torrijos, M. ; Godon, J.-J. ; Bernet, N. ; Rapaport, A.

Biochemical Engineering Journal, 2018, 130 : 66-75.

The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes

Publications

Henry, V. J. ; Goelzer, A. ; Ferré, A. ; Fischer, S. ; Dinh, M. ; Loux, V. ; Froidevaux ; Fromion, V.

Journal of Biomedical Semantics, 2017, 8 (53) : 16 pages.

The virtual food system: Innovative models and experiential feedback in technologies for winemaking, the cereals chain, food packaging and eco-designed starter production

Publications

Aceves Lara, C. A. ; Athes, V. ; Buche, P. ; Della Valle, G. ; Farines, V. ; Fonseca, F. ; Guillard, V. ; Kansou, K. ; Kristiawan, M. ; Monclus, V. ; Mouret, J.-R. ; Ndiaye, A. ; Neveu, P. ; Passot, S. ; Pénicaud, C. ; Sablayrolles, J.-M. ; Salmon, J.-M. ; Thomopoulos, R. ; Trelea, I.-C.

Innovative Food Science and Emerging Technologies, 2018, 46 : 54-64.

About the minimal time crisis problem

Publications

Bayen, T. ; Rapaport, A.

ESAIM Proceedings, 2017, 57 : 1-11.

Modelling CO 2 transfer in foil ripened semi-hard Swiss-type cheese

Publications

Acerbi, F. ; Guillard, V. ; Saubanere, M. ; Guillaume, C. ; Gontard, N.

Journal of Food Engineering, 2018, 222 : 73-83.

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Publications

Chan, Y.-B. ; Ranwez, V. ; Scornavaccac, C.

Journal of Theoretical Biology, 2017, 432 : 1-13.

Inherent relevance of MRMT models to concentration variance and mixing-induced reactivity

Publications

Babey, T. ; de Dreuzy, J.-R. ; Rapaport, A. ; Rojas-Palma, A.

Advances in Water Resources, 2017, 110 : 291-298.

Optimal control of physical backwash strategy - towards the enhancement of membrane filtration process performance

Publications

Kalboussi, N. ; Harmand, J. ; Rapaport, A. ; Bayen, T. ; Ellouze, F. ; Ben Amar, N.

Journal of Membrane Science, 2018, 545 : 38-48.

Limit theorems for some branching measure-valued processes

Publications

Cloez, B.

Advances in Applied Probability, 2017, 49 (2) : 549-580.

Asymptotic stability of a coupled advection-diffusion-reaction system arising in bioreactor processes

Publications

Crespo , M. ; Ivorra, B. ; Ramos, A. M.

Electronic Journal of Differential Equations, 2017 : 1-26.

Thermodynamic characterization of single-stage spray dryers: Mass and energy balances for milk drying

Publications

Raimundo da Silva, C. ; Martins, E. ; Caldas Pereira Silveira, A. ; Simeão, M. ; MENDES, A. L. ; TULER PERRONE, I. ; Schuck, P. ; De Carvahlo, A. F.

Drying Technology, 2017, 35 (15) : 1791-1798.

Estimating the intensity function of spatial point processes outside the observation window

Publications

Gabriel, E. ; Coville, J. ; Chadoeuf, J.

Spatial Statistics, 2017, 22 (2) : 225-239.

Review: To be or not to be an identifiable model. Is this a relevant question in animal science modelling?

Publications

Munoz Tamayo, R. ; Puillet, L. ; Daniel, J.-B. ; Sauvant, D. ; Martin, O. ; Taghipoor, M. ; Blavy, P.

Animal, 2017 : 12 p.

Time-optimal control of concentrations changes in the chemostat with one single speciestn1]

Publications

Bayen, T. ; Harmand, J. ; Sebbah, M.

Applied Mathematical Modelling, 2017, 50 : 257-278.

The generalized Simpson's entropy is a measure of biodiversity

Publications

Grabchak, M. ; Marcon, E. ; Lang, G. ; Zhang, Z.

Plos One, 2017, 12 (3)

Socioeconomic and environmental determinants of dengue transmission in an urban setting: An ecological study in Noumea, New Caledonia

Publications

Zellweger, R. M. ; Cano, J. ; Mangeas, M. ; Taglioni, F. ; Mercier, A. ; Despinoy, M. ; Menkes, C. E. ; Dupont-Rouzeyrol, M. ; Nikolay, B. ; Teurlai, M.

Plos Neglected Tropical Diseases, 2017, 11 (4)

The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks

Publications

Azpeitia, E. ; Munoz, S. ; Gonzalez-Tokman, D. ; Martinez-Sanchez, M. E. ; Weinstein, N. ; Naldi, A. ; Alvarez-Buylla, E. R. ; Rosenblueth, D. A. ; Mendoza, L.

Scientific Reports, 2017, 7 : 1-14.

Erratum: The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks (vol 7, 42023, 2017)

Publications

Azpeitia, E. ; Munoz, S. ; Gonzalez-Tokman, D. ; Martinez-Sanchez, M. E. ; Weinstein, N. ; Naldi, A. ; Alvarez-Buylla, E. R. ; Rosenblueth, D. A. ; Mendoza, L.

Scientific Reports, 2017, 7